name: bioinfo-starter
channels:
  - conda-forge
  - bioconda
dependencies:
  - python=3.12
  - pip
  - r-base
  - r-irkernel
  - jupyterlab
  - notebook
  - ipykernel
  - pandas
  - numpy
  - scipy
  - matplotlib
  - seaborn
  - scikit-learn
  - biopython
  - fastqc
  - multiqc
  - samtools
  - bcftools
  - bedtools
  - seqkit
  - sra-tools
  - openjdk=17
  - nextflow
  - git
  - curl
  - wget
  - tree
  - ripgrep